December 2024

CRISPR-Cas9 Gene Editing for Sickle Cell Disease and β-Thalassemia

Did you know that the most common monogenic diseases, that is, concerning a single gene, are beta-thalassemia (TDT) and sickle cell disease (SCD)? Affecting around 360 000 people worldwide, up until recently these diseases were largely non-treatable or had ineffective treatment plans. Both of them concern the hemoglobin β subunit gene (HBB). TDT has deformed or absent beta chains, while SCD replaces the sixth amino acid, glutamic acid, for valine. Now, treatments using gene editing represent a pivotal point. Both TDT and SCD treatments primarily focus on pain management and reducing side effects of blood transfusions such as iron buildup. What is intriguing is that symptoms emerge one year after birth. Why is that? A baby’s hemoglobin in their first year of life still has significant levels of gamma globin. This is a chain that binds oxygen strongly. It discharges it to tissues less effectively than beta globin. All this is in relation to the ever increasing oxygen needs of developing bodies. Babies are asymptomatic in the beginning because their hemoglobin has no beta chains, an observation that became the foundation for treating the cause of these blood ailments. Beta chains, as a key component for hemoglobin function, support the quaternary structure of the oxygen-binding molecule. As adults we have a transcription factor called BCL11A. It suppresses gene expression of gamma globin chains, therefore we lack fetal globin. So, why do we stop producing it when it protects us from symptoms of TDT and SCD? Unfortunately, it’s packed with a plethora of risks such as blood clots and visceral ischemia. A fascinating phenomenon appears in adults with higher expression of BCL11A locus on chromosome 2, which has less severe manifestations. This occurs because they produce more fetal hemoglobin. This, in turn, protects them against these blood ailments.    What is CRISPR-Cas9 gene editing? CRISPR stands for Clustered  Regularly Interspaced Short Palindromic Repeats. It represents a family of DNA sequences of prokaryotic organisms. This DNA is derived from bacteriophages, viruses that infect bacteria. It can be used by prokaryotes to halt future attacks. Cas9 is an enzyme that links itself to CRISPR sequences. This serves as a guide to recognize and open up specific strands of DNA complementary to CRISPR making gene editing possible for living organisms. This technique allows for gene manipulation within a bacterial DNA which is then placed in a patient’s cell to activate gamma globin synthesis. This aspect made gene manipulation possible in humans, specifically in the BCL11A locus by reducing its function and restoring γ-globin synthesis. As far as the treatment goes, the target groups underwent myeloablation, suppression of erythroid cells, and received gene altered bone marrow from healthy subjects increasing their levels of fetal hemoglobin. Bone marrow extraction allows patients to produce gamma globin on their own. This decreases the need for blood transfusions and other treatments.    Scientific discoveries can only happen through commitment and perseverance. As a result of innovative studies and team effort we get to connect with one another all around the world. The field of gene editing, especially, is growing at a fast pace. If you found this article helpful and believe that knowledge is power, keep up to date with our work. Also, read the full text here! About the author… Hello, my name is Cristi, and I am a fourth year medical student passionate about research and trying to build a career in the medical field I can be proud of. Oh and I also play tennis and I have a chinchilla that loves apples.

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A New Breast Cancer Detection Tool – Free Methylated DNA

Breast cancer is the most frequent type of cancer in women. Even though mammography is an excellent screening tool, it may still not be enough for early detection of breast cancer. Could there be any other form of early identification? Scientists discovered that dissemination of cancerous cells starts at the very early stages. This means that they can be found in the blood. Taking advantage of this event, these cells’ DNA can be a tool for identifying breast cancer even a year prior to the manifestations that could be detected by the mammogram! A story about methylated DNA At first, they took samples of cancerous tissue and White Blood Cells (WBC) in order to extract DNA. Then, using Reduced Representation Bisulfite Sequencing (a method that cuts DNA into specific segments, then sequences it) together with PCR and methyltransferases (in order to maintain the methylation sequences) they found tumor-specific methylation patterns (18 to be exact). And one of them is the region called EFC#93. Methylated DNA has now entered the discourse. But what even is a methylation pattern? Our DNA has some regions called CpG islands – regions formed of cytosine followed by a guanine that repeats every few bases. A methyl radical can be attached to these C-G repeats, forming methylation patterns. EFC#93 contains 5 C-Gs. Some of these patterns are specific to cancer cells (the more methylated ones) and some are WBC specific (the less methylated). This is important, because in the bloodstream, the most cell-free DNA comes from WBC, and it is necessary to have a clear distinction between them.  The scientists then compared these results to DNA extracted from the serum of cancer patients and discovered a correlation between the presence of EFC#93 methylation pattern and the disease prognosis. If present, the prognosis is unfortunately worse. Furthermore if Circulating Tumor Cells (CTCs) are also present, the chances of survival become less and less favorable. But it is not just bad news! EFC#93 presence in seemingly healthy people could indicate a very early diagnosis of breast cancer, thus enabling earlier diagnosis and  treatment.  If you found this article interesting and want to take part in shaping the future, stay tuned and stay curious with us! Read the full text here. See ya’ later! About the author… Hi, my name’s Teodor, a second year medical student. I am a science enthusiast, amateur speedcuber, and hardcore metalhead.

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